<?xml version="1.0" encoding="UTF-8"?>
<Global name="Annotations" version="1">

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              index="https://s3.amazonaws.com/igv.broadinstitute.org/data/hg38/gencode.v24.annotation.sorted.gtf.gz.tbi"
              hyperlink="http://www.gencodegenes.org/"/>
    <Resource name="Gencode V24 Basic"
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              index="https://s3.amazonaws.com/igv.broadinstitute.org/data/hg38/gencode.v24.basic.annotation.sorted.gtf.gz.tbi"
              hyperlink="http://www.gencodegenes.org/"/>
    <Resource name="Ensembl Genes (94)"
              path="https://s3.amazonaws.com/igv.org.genomes/hg38/Homo_sapiens.GRCh38.94.chr.gff3.gz"
              index="https://s3.amazonaws.com/igv.org.genomes/hg38/Homo_sapiens.GRCh38.94.chr.gff3.gz.tbi"
              trackLine="visibility=pack"
              hyperlink="ftp://ftp.ensembl.org/pub/release-80/README"/>
    <Resource name="All Snps 1.4.2"
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              index="https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/dbsnp142_All.vcf.gz.tbi"
              hyperlink="http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/"/>
    <Resource name="Common Snps 1.4.2"
              path="https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/dbsnp142_common_all.vcf.gz"
              index="https://s3.amazonaws.com/igv.broadinstitute.org/annotations/hg38/dbsnp142_common_all.vcf.gz.tbi"
              hyperlink="http://www.ncbi.nlm.nih.gov/variation/docs/human_variation_vcf/"/>
    <Resource name="Phastcons (20 way)"
              path="https://data.broadinstitute.org/igvdata/annotations/hg38/hg38.phastCons20way.bw"
              hyperlink="https://genome.ucsc.edu/cgi-bin/hgTrackUi?g=cons20way"/>
    <Resource trackLine='viewLimits=0:100' name="GC %"
              path="http://hgdownload.soe.ucsc.edu/gbdb/hg38/bbi/gc5BaseBw/gc5Base.bw"/>

    <Category name="Repeat Masker"
              hyperlink="https://genome.ucsc.edu/cgi-bin/hgTrackUi?g=rmsk">
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Simple_repeat.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="Satellite"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Satellite.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="LINE"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LINE.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="DNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_DNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_DNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="SINE"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_SINE.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_SINE.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="LTR"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LTR.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_LTR.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="Low_complexity"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Low_complexity.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="snRNA"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_snRNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="tRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_tRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_tRNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="Retroposon"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Retroposon.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="srpRNA"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_srpRNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="rRNA"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_rRNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="Unknown"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Unknown.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_Unknown.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="RC"
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                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_RC.bed.gz.tbi"
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        <Resource name="scRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_scRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_scRNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
        <Resource name="RNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_RNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/hg38/rmsk/hg38_rmsk_RNA.bed.gz.tbi"
                  trackLine='useScore=1'/>
    </Category>


</Global>
