<?xml version="1.0" encoding="UTF-8"?>
<Global name="Annotations (mm10)" version="1">

    <Resource name="db Snp 1.42"
              path="https://s3.amazonaws.com/igv.org.genomes/mm10/snp142.txt.gz"
              index="https://s3.amazonaws.com/igv.org.genomes/mm10/snp142.txt.gz.tbi"
              hyperlink="http://www.ncbi.nlm.nih.gov/SNP/"
              url="http://www.ncbi.nlm.nih.gov/SNP/snp_ref.cgi?type=rs&amp;rs=$$"/>

    <Category name="Repeat Masker"
              hyperlink="https://genome.ucsc.edu/cgi-bin/hgTrackUi?g=rmsk">
        <Resource name="LINE"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_LINE.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_LINE.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="Simple_repeat"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Simple_repeat.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Simple_repeat.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="LTR"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_LTR.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_LTR.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="SINE"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_SINE.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_SINE.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="Low_complexity"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Low_complexity.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Low_complexity.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="DNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_DNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_DNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="snRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_snRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_snRNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="Other"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Other.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Other.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="Satellite"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Satellite.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Satellite.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="Unknown"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Unknown.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_Unknown.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="srpRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_srpRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_srpRNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="tRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_tRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_tRNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="RNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_RNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_RNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="scRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_scRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_scRNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="RC"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_RC.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_RC.bed.gz.tbi"
                  trackLine='useScore=1'
        />
        <Resource name="rRNA"
                  path="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_rRNA.bed.gz"
                  index="https://s3.amazonaws.com/igv.org.genomes/mm10/rmsk/mm10_rmsk_rRNA.bed.gz.tbi"
                  trackLine='useScore=1'
        />
    </Category>
</Global>
