rsem (1.3.3+dfsg-3) unstable; urgency=medium

  * Team upload.

  [ Andreas Tille ]
  * Fix salca-ci since i386 is explicitly excluded by Build-Depends: bowtie2

  [ Étienne Mollier ]
  * stdgnu++11.patch: new: fix ftbfs with boost1.83.
    boost1.83 looks to require building with gnu++11, but upstream
    codebase is still at gnu++98 for now, hence the nature of the patch.
    (Closes: #1056010)
  * d/control: declare compliance to standards version 4.6.2.
  * d/control: build depend on libncurses-dev.
    This replaces the obsolete libncurses5-dev.

 -- Étienne Mollier <emollier@debian.org>  Mon, 18 Dec 2023 13:58:36 +0100

rsem (1.3.3+dfsg-2) unstable; urgency=medium

  [ Steffen Moeller ]
  * Fix watchfile to detect new versions on github (routine-update)

  [ Andreas Tille ]
  * Standards-Version: 4.6.0 (routine-update)
  * debhelper-compat 13 (routine-update)
  * Add salsa-ci file (routine-update)
  * Rules-Requires-Root: no (routine-update)
  * Use secure URI in Homepage field.
  * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
    Repository-Browse.

 -- Andreas Tille <tille@debian.org>  Thu, 09 Sep 2021 08:01:13 +0200

rsem (1.3.3+dfsg-1) unstable; urgency=medium

  * Update homepage
  * New upstream version, added hisat2 mode
  * Standards-Version: 4.5.0 (routine-update)

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Mon, 17 Feb 2020 15:49:34 +0100

rsem (1.3.2+dfsg-2) unstable; urgency=medium

  * Use 2to3 to port to Python3
    Closes: #938415
  * debhelper-compat 12

 -- Andreas Tille <tille@debian.org>  Thu, 12 Sep 2019 11:39:48 +0200

rsem (1.3.2+dfsg-1) unstable; urgency=medium

  * New upstream version
  * debhelper 12
  * Standards-Version: 4.4.0
  * Remove trailing whitespace in debian/changelog

 -- Andreas Tille <tille@debian.org>  Fri, 12 Jul 2019 21:52:15 +0200

rsem (1.3.1+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Standards-Version: 4.2.1
  * Fix Perl interpreter path
  * Remove unneeded get-orig-source target

 -- Andreas Tille <tille@debian.org>  Wed, 26 Sep 2018 21:41:44 +0200

rsem (1.3.0+dfsg-2) unstable; urgency=medium

  [ Katerina Kalou ]
  * Team upload.
  * Add autopkgtest
    Closes: #890782

  [ Andreas Tille ]
  * Upload to unstable
    Closes: #847569
  * Remove unused lintian-override
  * Drop unused License specification
  * Point Vcs-fields to Salsa
  * Standards-Version: 4.1.4

 -- Katerina Kalou <aik.kalou@gmail.com>  Fri, 25 May 2018 13:56:22 +0200

rsem (1.3.0+dfsg-1) experimental; urgency=medium

  * New upstream version
  * d/watch:
     - version=4
     - xz compression
  * remove code copy of samtools-1.3
  * cme fix dpkg-control
  * debhelper 11
  * d/rules: do not parse d/changelog

 -- Andreas Tille <tille@debian.org>  Sun, 18 Feb 2018 20:34:37 +0100

rsem (1.2.31+dfsg-1) unstable; urgency=medium

  * New upstream release

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sat, 04 Jun 2016 04:40:56 -0700

rsem (1.2.30+dfsg-1) unstable; urgency=medium

  * New upstream release
  * Use upstream's modified samtools-1.3 as that is required for correct
    operation
  * re-enable hardening to match source changes
  * generate manual pages for rsem-bam2wig & rsem-simulate-reads

 -- Michael R. Crusoe <michael.crusoe@gmail.com>  Sun, 15 May 2016 03:49:04 -0700

rsem (1.2.26+dfsg-3) unstable; urgency=medium

  * Team upload.
  * Bump Standards-Version.
  * Enable full hardening.
  * Re-introduce bowtie Build-Dep enable builds only on those architectures
    where bowtie is available
    Closes: #803550

 -- Sascha Steinbiss <sascha@steinbiss.name>  Fri, 13 May 2016 20:45:27 +0000

rsem (1.2.26+dfsg-2) unstable; urgency=medium

  * Now compatible with g++-6 (Closes: #811615)
  * Section set to 'extra' due to dependency on bowtie|bowtie2 which are both
    in section 'extra'.

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sat, 05 Mar 2016 05:27:01 -0800

rsem (1.2.26+dfsg-1) unstable; urgency=medium

  * New upstream release

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Sun, 31 Jan 2016 03:20:22 -0800

rsem (1.2.23+dfsg-1) unstable; urgency=medium

  [ Michael R. Crusoe ]
  * New upstream release

  [ Andreas Tille ]
  * Build-Depends: bowtie to enable builds only on those architectures
    where bowtie is available
    Closes: #803550

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Thu, 05 Nov 2015 19:28:01 +0100

rsem (1.2.22+dfsg-1) unstable; urgency=low

  * Initial release (Closes: #778578)

 -- Michael R. Crusoe <crusoe@ucdavis.edu>  Thu, 27 Aug 2015 13:17:53 -0400
