My eyes were finally opened and I understood nature.
I learned at the same time to love it.
— Claude Monet
ggsci offers a collection of high-quality color palettes inspired by colors used in scientific journals, data visualization libraries, science fiction movies, and TV shows. The color palettes in ggsci are available as ggplot2 scales. For all the color palettes, the corresponding scales are named as:
scale_color_palname()scale_fill_palname()We also provided aliases, such as scale_colour_palname() for scale_color_palname(). All available color palettes are summarized in the table below.
| Name | Scales | Palette Types | Palette Generator |
|---|---|---|---|
| NPG | scale_color_npg() scale_fill_npg() |
"nrc" |
pal_npg() |
| AAAS | scale_color_aaas() scale_fill_aaas() |
"default" |
pal_aaas() |
| NEJM | scale_color_nejm() scale_fill_nejm() |
"default" |
pal_nejm() |
| Lancet | scale_color_lancet() scale_fill_lancet() |
"lanonc" |
pal_lancet() |
| JAMA | scale_color_jama() scale_fill_jama() |
"default" |
pal_jama() |
| JCO | scale_color_jco() scale_fill_jco() |
"default" |
pal_jco() |
| UCSCGB | scale_color_ucscgb() scale_fill_ucscgb() |
"default" |
pal_ucscgb() |
| D3 | scale_color_d3()scale_fill_d3() |
"category10" "category20" "category20b" "category20c" |
pal_d3() |
| LocusZoom | scale_color_locuszoom() scale_fill_locuszoom() |
"default" |
pal_locuszoom() |
| IGV | scale_color_igv() scale_fill_igv() |
"default""alternating" |
pal_igv() |
| UChicago | scale_color_uchicago() scale_fill_uchicago() |
"default""light""dark" |
pal_uchicago() |
| Star Trek | scale_color_startrek() scale_fill_startrek() |
"uniform" |
pal_startrek() |
| Tron Legacy | scale_color_tron() scale_fill_tron() |
"legacy" |
pal_tron() |
| Futurama | scale_color_futurama() scale_fill_futurama() |
"planetexpress" |
pal_futurama() |
| Rick and Morty | scale_color_rickandmorty() scale_fill_rickandmorty() |
"schwifty" |
pal_rickandmorty() |
| The Simpsons | scale_color_simpsons() scale_fill_simpsons() |
"springfield" |
pal_simpsons() |
| GSEA | scale_color_gsea() scale_fill_gsea() |
"default" |
pal_gsea() |
| Material Design | scale_color_material() scale_fill_material() |
"red" "pink""purple" "deep-purple""indigo" "blue""light-blue" "cyan""teal" "green""light-green" "lime""yellow" "amber""orange" "deep-orange""brown" "grey""blue-grey" |
pal_material() |
We will use scatterplots with smooth curves, and bar plots to demonstrate the discrete color palettes in ggsci.
library("ggsci")
library("ggplot2")
library("gridExtra")
data("diamonds")
p1 = ggplot(subset(diamonds, carat >= 2.2),
aes(x = table, y = price, colour = cut)) +
geom_point(alpha = 0.7) +
geom_smooth(method = "loess", alpha = 0.05, size = 1, span = 1) +
theme_bw()
p2 = ggplot(subset(diamonds, carat > 2.2 & depth > 55 & depth < 70),
aes(x = depth, fill = cut)) +
geom_histogram(colour = "black", binwidth = 1, position = "dodge") +
theme_bw()The NPG palette is inspired by the plots in the journals published by
p1_npg = p1 + scale_color_npg()
p2_npg = p2 + scale_fill_npg()
grid.arrange(p1_npg, p2_npg, ncol = 2)The AAAS palette is inspired by the plots in the journals published by
p1_aaas = p1 + scale_color_aaas()
p2_aaas = p2 + scale_fill_aaas()
grid.arrange(p1_aaas, p2_aaas, ncol = 2)