iVar: src/call_consensus_pileup.h Source File

iVar

call_consensus_pileup.h
1 #include<iostream>
2 #include "allele_functions.h"
3
4 #ifndef call_consensus_from_pileup
5 #define call_consensus_from_pileup
6
7 struct ret_t {
8 std::string nuc;
9 std::string q;
10 };
11
12 void format_alleles(std::vector<allele> &ad);
13 int call_consensus_from_plup(std::istream &cin, std::string out_file, uint8_t min_qual, double threshold);
14 ret_t get_consensus_allele(std::vector<allele> ad, uint8_t min_qual, double threshold);
15
16 #endif
ret_t
Definition: call_consensus_pileup.h:7