Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: biobambam2
Source: https://gitlab.com/german.tischler/biobambam2/tags
Files-Excluded:
 ltmain.sh
 install-sh
 Makefile.in
 INSTALL
 depcomp
 aclocal.m4
 missing
 configure
 compile
 src/Makefile.in
 m4/libtool.m4
 test/Makefile.in
 autom4te.cache
 autom4te.cache/traces.2
 autom4te.cache/requests
 autom4te.cache/traces.0
 autom4te.cache/output.1
 autom4te.cache/output.2
 autom4te.cache/traces.1
 autom4te.cache/output.0
 config.guess
 config.sub


Files: *
Copyright: 2013-2022 German Tischler <tischler@mpi-cbg.de>
           2011-2016 Genome Research Limited
License: GPL-3+

Files: src/biobambam2/ClipAdapters*
Copyright: 2008, 2009, 2013-2014 Heng Li <lh3@sanger.ac.uk>, Genome Research Ltd
           2010, 2012, 2013 Heng Li <lh3@sanger.ac.uk>, Broad Institute
           2013 German Tischler
           2013, 2015 Genome Research Limited
License: MIT+GPL-3+
 On Debian systems you can find the full text of the GNU General Public
 License version 3 at /usr/share/common-licenses/GPL-3.
 .
 Cigar type code taken from htslib/sam.h copyright by Heng Li under the
 MIT/Expat License as follows:
 .
    Permission is hereby granted, free of charge, to any person obtaining a copy
    of this software and associated documentation files (the "Software"), to deal
    in the Software without restriction, including without limitation the rights
    to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
    copies of the Software, and to permit persons to whom the Software is
    furnished to do so, subject to the following conditions:
 .
    The above copyright notice and this permission notice shall be included in
    all copies or substantial portions of the Software.
 .
    THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
    IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
    FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
    THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
    LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
    FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
    DEALINGS IN THE SOFTWARE

Files: src/programs/bamseqchksum*
Copyright: 2014-2014 David K. Jackson
           2009-2016 German Tischler
           2011-2014 Genome Research Limited
License: GPL-3+

Files: debian/*
Copyright: 2019 Andreas Tille <tille@debian.org>
           2020-2023 Étienne Mollier <emollier@debian.org>
License: GPL-3+

License: GPL-3+
    This program is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.
 .
    This program is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.
 .
 On Debian systems you can find the full text of the GNU General Public
 License version 3 at /usr/share/common-licenses/GPL-3.
