Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: barrnap
Source: https://github.com/tseemann/barrnap
Files-Excluded: binaries/* LICENSE.SILVA

Files: *
Copyright:
 Copyright 2013 Torsten Seemann <torsten.seemann@monash.edu>
License: GPL-3+

Files: db/*
Copyright:
 Copyright 2013 Torsten Seemann <torsten.seemann@monash.edu>
Comment: the full text of CC0 is available at /usr/share/common-licenses/CC0-1.0
License: CC0-1.0
 The HMMs in the db/ directory have been built from data sources covered by the
 following license:
 .
 The person who associated a work with this deed has dedicated the work to the
 public domain by waiving all of his or her rights to the work worldwide under
 copyright law, including all related and neighboring rights, to the extent
 allowed by law.
 .
 You can copy, modify, distribute and perform the work, even for commercial
 purposes, all without asking permission. See Other Information below.
 .
 Other Information
 .
 In no way are the patent or trademark rights of any person affected by CC0, nor
 are the rights that other persons may have in the work or in how the work is
 used, such as publicity or privacy rights.
 .
 Unless expressly stated otherwise, the person who associated a work with this
 deed makes no warranties about the work, and disclaims liability for all uses
 of the work, to the fullest extent permitted by applicable law.
 .
 When using or citing the work, you should not imply endorsement by the author
 or the affirmer.

Files: debian/*
Copyright: 2014-2020 Sascha Steinbiss <sascha@steinbiss.name>
License: GPL-3+

Files: debian/patches/update_dbs
Copyright: 2023 Michael R. Crusoe <crusoe@debian.org>
License: CC0-1.0 and CC-BY-4.0
 This patch was created from data in RFAM 15.9 (licensed CC0-1.0)
 and SILVA 138.1 (licensesd CC-BY-4.0) using the script from
 https://github.com/tseemann/barrnap/pull/67/files#diff-6bfb761b8f7e87e04787fdc57a57f0a84bba1c774c32c1b6f08bf8ca41129531
 a.k.a https://github.com/mr-c/barrnap/blob/fd2d147a62c8d5aee45b56c6d56c9310b8383cf6/build/build_HMMs.sh
 and only software packages from Debian main
 .
 RFAM license
 (https://ftp.ebi.ac.uk/pub/databases/Rfam/14.9/COPYING)
 ===
 Rfam version 14.9 was produced at the European Bioinformatics Institute.
 Rfam is based on a sequence database called Rfamseq. The genome-centric
 version of Rfam is built from a collection of reference genomes,
 which are provided by Uniprot proteomes.
 .
 Rfam is freely available under the Creative Commons Zero ("CC0")
 licence. (http://creativecommons.org/publicdomain/zero/1.0/)
 .
 Rfam is powered by the Infernal package (http://eddylab.org/infernal/).
 The current lead developer of Infernal is Eric Nawrocki,
 at the National Center for Biotechnology Information (NCBI,
 nawrocke@ncbi.nlm.nih.gov).
 ===
 .
 SILVA version 138+ license
 (https://www.arb-silva.de/fileadmin/silva_databases/release_138_1/LICENSE.txt)
 ===
 As of release 138 the SILVA databases, its taxonomy, and all files provided for
 download are licensed unter Creative Commons Attribution 4.0 (CC-BY 4.0).
 .
 All data is freely available for academic and commercial use as long as SILVA
 is credited as original author and a link to the full license is provided.
 .
 The full license is available:
     https://creativecommons.org/licenses/by/4.0/ and
     https://creativecommons.org/licenses/by/4.0/legalcode
 ===

License: GPL-3+
 This program is free software: you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation, either version 3 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program.  If not, see <http://www.gnu.org/licenses/>.
 .
 On Debian systems, the complete text of the GNU General
 Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'.


