C-Index
Date: 2014-10-01

A B C D E F G H I L M N O Q R S T U

## C

calculateTargetCoverageFromGCcontent(double) - Static method in class artificialFastqGenerator.ArtificialFastqGenerationUtils
  Deprecated.
captureProbeLength - Static variable in class artificialFastqGenerator.Main
coverageBasedOnGCcontent - Static variable in class artificialFastqGenerator.Main
coverageMeanGCcontentSpread - Static variable in class artificialFastqGenerator.Main
coverageMeanPeak - Static variable in class artificialFastqGenerator.Main
coverageMeanPeakGCcontent - Static variable in class artificialFastqGenerator.Main
coverageSD - Static variable in class artificialFastqGenerator.Main
CoverageStatisticsCalculator - Class in artificialFastqGenerator
  Instances of this class calculate regional and overall coverage statistics for nucleobases.
CoverageStatisticsCalculator() - Constructor for class artificialFastqGenerator.CoverageStatisticsCalculator
  Initialise a new CoverageStatisticsCalculator object.
createChromosomeArray() - Static method in class artificialFastqGenerator.Genomes
  Create an array of chromosome header strings.
createNucleobase(char) - Method in class artificialFastqGenerator.NucleobaseAndReadFactory
  Create a Nucleobase object.
createPairedEndReads(ArrayList<Nucleobase>, ArrayList<Nucleobase>) - Method in class artificialFastqGenerator.NucleobaseAndReadFactory
  Create a pair of reads.
createSequence(int, int) - Method in class artificialFastqGenerator.ArtificialFastqGenerator.BabyRead

A B C D E F G H I L M N O Q R S T U