/*************************************************************************\
 * AdapterRemoval - cleaning next-generation sequencing reads            *
 *                                                                       *
 * Copyright (C) 2011 by Stinus Lindgreen - stinus@binf.ku.dk            *
 * Copyright (C) 2014 by Mikkel Schubert - mikkelsch@gmail.com           *
 *                                                                       *
 * If you use the program, please cite the paper:                        *
 * S. Lindgreen (2012): AdapterRemoval: Easy Cleaning of Next Generation *
 * Sequencing Reads, BMC Research Notes, 5:337                           *
 * http://www.biomedcentral.com/1756-0500/5/337/                         *
 *                                                                       *
 * This program is free software: you can redistribute it and/or modify  *
 * it under the terms of the GNU General Public License as published by  *
 * the Free Software Foundation, either version 3 of the License, or     *
 * (at your option) any later version.                                   *
 *                                                                       *
 * This program is distributed in the hope that it will be useful,       *
 * but WITHOUT ANY WARRANTY; without even the implied warranty of        *
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the         *
 * GNU General Public License for more details.                          *
 *                                                                       *
 * You should have received a copy of the GNU General Public License     *
 * along with this program.  If not, see <http://www.gnu.org/licenses/>. *
\*************************************************************************/
#ifndef MAIN_H
#define MAIN_H

#include <string>

namespace ar
{

const std::string NAME = "AdapterRemoval";
const std::string VERSION = "ver. 2.3.4";
const std::string HELPTEXT = \
    "This program searches for and removes remnant adapter sequences from\n"
    "your read data.  The program can analyze both single end and paired end\n"
    "data.  For detailed explanation of the parameters, please refer to the\n"
    "man page.  For comments, suggestions and feedback please use\n"
    "https://github.com/MikkelSchubert/adapterremoval/issues/new\n"
    "\n"
    "If you use the program, please cite the paper:\n"
    "    Schubert, Lindgreen, and Orlando (2016). AdapterRemoval v2: rapid\n"
    "    adapter trimming, identification, and read merging.\n"
    "    BMC Research Notes, 12;9(1):88.\n\n"
    "    http://bmcresnotes.biomedcentral.com/articles/10.1186/s13104-016-1900-2\n";

} // namespace ar

#endif
