# LAST version 540
#
# a=7 b=1 A=7 B=1 c=100000 F=-1 e=40 d=13 x=39 y=9 z=39
# R=01 u=2 s=2 T=0 m=10 l=1 n=10 k=1 i=8192 w=1000 t=0.910239 g=1 j=3 Q=0
# humdb
# Reference sequences=1 normal letters=16571
#
#    A  C  G  T
# A  1 -1 -1 -1
# C -1  1 -1 -1
# G -1 -1  1 -1
# T -1 -1 -1  1
#
# Coordinates are 0-based.  For - strand matches, coordinates
# in the reverse complement of the 2nd sequence are used.
#
# name start alnSize strand seqSize alignment
#
# batch 0
a score=1814
s humanMito 2914 5333 + 16571 [encoded data, 5399 characters]
s fuguMito  2433 5375 + 16447 [encoded data, 5399 characters]

a score=1562
s humanMito 8746 5292 + 16571 [encoded data, 5346 characters]
s fuguMito  8292 5345 + 16447 [encoded data, 5346 characters]

a score=518
s humanMito 14432 1448 + 16571 GCCTCAGGATACTCCTCAATAGCCATCGCTGTAGTATATCCAAAGACAACCATCATTCCCCCTAAATAAATtaaaaaaactattaaacCCATATAACCTCCCCCAAAATTCAGAATAATAACACACCCGACCACACCGCTAACAATCAGTACTAAACCCCCATAAATAGGAGAAGGCTTAGAAGAAAACCCCACAAACCCCATTACTAAACCCACACTCAACAGAAACAAAGCATACATCATTATTCTCGCACGGACTACAACCACGACCAATGATATGAAAAACCATCGTTGTATTTCAACTACAAGAACACCAATGACCCCAATACGCAAAATTAACCCCCTAATAAAATTAATTAACCACTCATTCATCGACCTCCCCACCCCATCCAACATCTCCGCATGATGAAACTTCGGCTCACTCCTTGGCGCCTGCCTGATCCTCCAAATCACCACAGGACTATTCCTAGCCATACACTACTCACCAGACGCCTCAACCGCCTTTTCATCAATCGCCCACATCACTCGAGACGTAAATTATGGCTGAATCATCCGCTACCTTCACGCCAATGGCGCCTCAATATTCTTTATCTGCCTCTTCCTACACATCGGGCGAGGCCTATATTACGGATCATTTCTCTACTCAGAAACCTGAAACATCGGCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTCCTCCCGTGAGGCCAAATATCATTCTGAGGGGCCACAGTAATTACAAACTTACTATCCGCCATCCCATACATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAGACAGTCCCACCCTCACACGATTCTTTACCTTTCACTTCATcttacccttcaTTATTGCAGCCCTAGCAGCACTCCACCTCCTATTCTTGCACGAAACGGGATCAAACAACCCCCTAGGAATCACCTCCCATTCCGATAAAATCACCTTCCACCCTTACTACACAATCAAAGACGCCCTCGGCTTACTTCTcttccttctctccttaatGACATTAACACTATTCTCACCAGACCTCCTAGGCGACCCAGACAATTATACCCTAGCCAACCCCTTAAACACCCCTCCCCACATCAAGCCCGAATGATATTTCCTATTCGCCTACACAATTCTCCGATCCGTCCCTAACAAACTAGGAGGCGTCCTTGCCCTATTACTATCCATCCTCATCCTAGCAATAATCCCCATCCTCCATATATCCAAACAACAAAGCATAATATTTCGCCCACTAAGCCAATCACTTTATTGACTCCTAGCCGCAGACCTCCTCATTCTAACCTGAATCGGAGGACAACCAGTAAGCTACCCTTTTACCATCATTGGACAAGTAGCATCCGTACTATACTTCACAACAATCCTaatcctaatacCAACTATCTCCCTAATTGAAAACAAAATACTCAA
s fuguMito  14029 1448 + 16447 GCCTTAGGATCCTTATCTGCAGACAGCGCTGACGAATAAATAAACACAACCAGTATACCCCCCATATAAATCATTAACAACACCAAAGACAAGAAAGTTCCCCCGTGCAAAACTGAAGCCCCACAGCAAAGAAGTGCAACCAGCACCAAATTGAAAACTCCATAAAAAGGAGCAGGATTTGTAGACAACACAATTATTACAACCAACATCCCTAATAAAAGAAAAACAAGCGCATAAAACATAGTTTCTGCCAGGATTTTAACCAGGACCTATGGCGTGAAAAACCATCGTTGTTACTCAACTACAAAAACACTAATGGCCAGCCTACGCAAAACCCACCCCCTACTAAAAATCGTAAACGACATAGTAATTGACCTTCCTACCCCCTCAAACATTTCCGCCTGATGAAACTTTGGCTCTCTACTCGGATTATGCCTTATTACACAAATCATCACAGGACTGTTCCTTGCAATACACTACACATCCGACATCTCTACCGCCTTTTCATCCGTAGCCCACATTTGCCGAGACGTAAACTACGGCTGACTAATTCGCAATCTACACGCAAACGGTGCCTCATTCTTTTTTATTTGCTTATACTCCCACATCGGCCGAGGTCTTTACTATGGCTCTTACCTAAGTAAAGAAACCTGAAACGTAGGGGTAGTCCTCTTACTTTTAGTAATGGCCACCGCTTTCGTAGGCTACGTTCTTCCATGAGGACAAATATCCTTCTGAGGCGCCACTGTAATTACAAACCTGCTCTCTGCTGTCCCCTACGTAGGAAACACGCTCGTTCAATGAGTATGAGGAGGCTTTTCAGTAGACAGCGCCACTCTAACACGATTCTTTGCCTTCCACTTCCTCCTCCCATTTATCGTTGCAGCCGCTGCCATCGTACATCTTATTTTTCTTCACGAAACAGGCTCCAACAATCCCCTAGGACTCAATTCAAACGCAGACAAAATCCCATTCCACCCATACTTCTCTTACAAAGACCTCCTGGGCTTCACAATCATACTCTCAGCCCTCGCAACACTCGCCCTATTCTCTCCAAACTACCTCGGAGACCCTGACAACTTCACACCAGCCAATCCTCTAGTTACCCCCGCCCACATTAAACCAGAATGGTATTTCCTATTTGCATACGCAATTCTACGATCTATCCCCAATAAGCTAGGAGGTGTTCTGGCCCTTCTTGCCTCAATCTTAATTCTTATAGTAGTTCCTTTCTTACACACCTCTAAACAACGAAGCCTAACATTCCGCCCACTATCACAATTCCTATTCTGAACCCTAATTGCCGACGTCGTCATCCTAACCTGAATTGGAGGCATGCCCGTCGAACATCCTTACATTATTATCGGACAAATTGCCTCAGTACTTTACTTCTCTCTCTTCCTAATCTTGATGCCAATAGCCGGTTGACTAGAAAATaaaatactaaa

a score=267
s humanMito 598 1041 + 16571 CAAAGCAATACACTGAAAATGTTTAGACGGGCTCACATCAC-CCCATAAACAAATAGGTTTGGTCCTAGCCTTTCTATTAGCTCTTAGTAAGATTACACATGCAAGCATCCCCGTTCCAGTGAGTTCACCCTCTAAATCACCACGATCAAAAGGGACAAGC-ATCAAGCACGCAGCAATGCAGCTCAAAACGCTTAGCCTAGCCACACCCCCACGGGAAA-CAGCAGTGATTAACCTTTAGCAATAAACGAAAGTTTAACTAAGCTATACTAACCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACCCAAGTCAATAGAAGCCGGCGTAAAGAGTGTTTTAGATCACCCCCTCCCCAATAAAGCTAAAACTCACCTGAGTTGTAAAAAACTCCAGTTGACACAAAATAGACTA-CGAAAGTGGCTTTAACATATCTGAACACACAATAGCTAAGACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAACAGTTAAATCAACAAAACTGCTCGCCAGAACACTACGAGCCACAGCTTAAAACTCAAAGGACCTGGCGGTGCTTCATATCCCTCTAGAGGAGCCTGTTCTGTAATCGATAAACCCCGATCAACCTCACCACCTCTTGCT----CAGCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAGCGCAAGT-ACCCACGTAAAGACGTTAGGTCAAGGTGTAGCCCATGAGGTGGCAAGAAATGGGCTACATTTTCTACCCCAGAAAACTACGATAGCCCTTATGAAACTTAAGGGTCGAAGGTGGATTTAGCAGTAAACTGAGAGTAGAGTGCTTAGTTGAACAGGGCCCTGAAGCGCGTACACACCGCCCGTCACCCTCCTCAAGTATACTTCAAAGGACATTTAACTAAAACCCCTACGCATTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAaagtgcacTTGGACGAACCAGAGTGTAGCTTAACA---CAAAGCACCCAACTTACAC
s fuguMito   16 1038 + 16447 CAAAGCAGAGTACTGAAGATGCTAAGATGGGCCCTGAAAAGTCCCGCAGGCACAAAAGCTTGGTCCTGACTTTACTAACAACTCTGATCAAACTTACACATGCAAGTATCCGCATCCCAGTGAAAATGCCCCCCgccccccGTCCGGAAATAGGGAGTTGGTATCAGGCACACAAATTTGTAGCCCATGACACCTAGCTTTGCCACGCCCCCAAGGGAATTCAGCAGTGATAAACATTAAGCCATAAGTGAAAACTTGACTTAGTTATGAT--CTAAAGAGTCGGTAAAACTCGTGCCAGCCACCGCGGTTATACGAGAGACCCAAGTTGTTAGCCAACGGCGTAAAGGGTGGTTAGAACTAAAAACAACAAACTGAGACCGAACACCTTCAAGGCTGTTATACGCTTCCGAAGCAACGAAGAACAATAACGAAAGTAGCCTCACTAACTC-GAACCCACGAAAGCTAGGACACAAACTGGGATTAGATACCCCACTATGCCTACCCCTAAAC---ACGATATGAAACTACGTACATATCCGCCTGGTTACTACGAGCATTAGCTTAAAACCCAAAGGACTTGGCGGTGCTTTAAAACCATCTAGAGGAGCCTGTTTTAAAACCGATACTCCCCGTTCAACCTCACCCCTCCTTGTTTTAACCGCCTATATACCACCGTCGTCAGCCTACCCTG-TGAAGGGCAAATAGTAGACAAAATTGGCACAGCCAAAAACGTCAGGTCGAGGTGTAGCGAATGGAGGGGGACAAAATGGGCTACATTCTCT-GCCTAGAGAAC-ACGAAAGATGTGCTGAAA-TGCACACCCGAAGGAGGATTTAGCAGTAAGCAAGAAATAGAGTGTCATGCTGAAACCGGCTATGAAGCGCGCACACACCGCCCGTCACTCTCCCCA---AACTCTTAATTTAAAAATAACTAATAAGCC--ACCAAAAGAAAAGGGGAGGCAAGTCGTAACATGGTAAGTGTACCGGAAGGTGCACTTGGAAAAACCGGAGCATAGCTTAACAGCTTAAAGCACCTCCCTTACAC

a score=161
s humanMito 2422 423 + 16571 GTCAACCCAACACAGGCATGCTCATAAGGAAAGGTTAAAAAAAGTAAAAGGAACTCGGCAAACCTTA--CCCCGCCTGTTTACCAAAAACATCACCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGAC-ACATGTTTAACGGCCGCGGTACCCTAACCGTGCAAAGGTAGCATAATCACTTGTTCCTTAAATAGGGACCTGTATGAATGGCTCCACGAGGGTTCAGCTGTCTCTTACTTTTAACCAGTGAAATTGACCTGCCCGTGAAGAGGCGGGCATGACACAGCAAGACGAGAAGACCCTATGGAGCTTTAATTTATTAATGCAAACAGTACCTAA---CAAACCCACAGGTCCTAAACTACCAAACCTGCATTAAAAATTTCGGTTGGGGCGACCTCGGAGCAGAACCCAacctcc
s fuguMito  1916 428 + 16447 GTTACCCCTACACTGGTGTGCCAAATAGGAAAGACTAAAAGAAAAAGAAGGAACTCGGCAAACTCAAAGCCTCGCCTGTTTACCAAAAACATCGCCTCTTGCTTCAAT-GAATAAGAGGTCACGCCTGCCCTGTGACTATATGTTTAACGGCCGCGGTATTTTGACCGTGCAAAGGTAGCGCAATCACTTGTCCTTTAAATGTGGACCTGTATGAATGGCATAACGAGGGCTTAGCTGTCTCCTTTCTCAAGTCAATGAACTTGATCTCCCCGTGCAGAAGCGGGGATAAAACCATAAGACGAGAAGACCCTATGGAGCTTTAGACAAAAAACAGCCCCTGTCAATAAACCCTAAATAAAGGGAATAAACCTAGTGAACCTGTTTTAATGTCTTTGGTTGGGGCGACCGCGGGGTAACAAaaaacccCC

a score=85
s humanMito 1742 289 + 16571 AGTATAGGCGATAGAAATTGAAACCTGGCGCAATAGATATAGTACCGCAAGGGAAAGATGAAAAATTA------TAACC-----AAGCATAATATAGCAAGGACTAACCCCTATACCTTCTGCATAATGAATTAACTAGAAATAACTTTGCAAGGAGAGCCAAAGCTAAGACCCCCGAAACCAGACGAGCTACCTAAGAACAGC--TAAAAGAGCACACCCGTCTATGTAGCAAAATAGTGGGAAGATTTATAGGTAGAGGCGACAAACCTACCGAGCCTGGTGATAGCTGGTTGTCCAAGA
s fuguMito  1182 300 + 16447 AGTATAGGAGATAGAAAAGGAA-CTAGGAGCTATAGATAAAGTACCGCAAGGGAACGCTGAAAGAGAAATGAAATAACCCAGTAAAGTAAAAAAAAGCAGAGATTACACCTCGTACCTTTTGCATCATGATTTAGCTAGTA-TAATTAGGCAAAGAGCACTTTAGTCTAACACCCCGAAACTGAATGAGCTACTCCAAGACAGCCTTTATAGGGCACATCCGTCTCTGTGGCAAAAGAGTGGAAAGAGCTTTGAGTAGAGGTGATAAACCTACCGAGTTCAGTTATAGCTGGTTGCCCGAGA

# Query sequences=1
