#!/bin/sh

# run from directory where this script is
cd `echo $0 | sed 's/\(.*\)\/.*/\1/'` # extract pathname
EXAMPLE_DIR=`pwd`

# check whether echo has the -e option
if test "`echo -e`" = "-e" ; then ECHO=echo ; else ECHO="echo -e" ; fi

$ECHO
$ECHO "$EXAMPLE_DIR : starting"
$ECHO
$ECHO "This example tests K-edge X-ray absorption spectra calculation"
$ECHO

# set the needed environment variables
. ../../environment_variables

# required executables and pseudopotentials
BIN_LIST="pw.x xspectra.x "
PSEUDO_LIST="Ni_PBE_TM_2pj.UPF  O_PBE_TM.UPF"

PSEUDO_DIR="$EXAMPLE_DIR/pseudo"
BIN_DIR="$EXAMPLE_DIR/../../bin/"
TMP_DIR="$EXAMPLE_DIR/results/tmp"

$ECHO
$ECHO "  executables directory: $BIN_DIR"
$ECHO "  pseudo directory:      $PSEUDO_DIR"
$ECHO "  temporary directory:   $TMP_DIR"
$ECHO
$ECHO "  checking that needed directories and files exist...\c"

# check for directories
for DIR in "$BIN_DIR" "$PSEUDO_DIR" ; do
    if test ! -d $DIR ; then
        $ECHO
        $ECHO "ERROR: $DIR not existent or not a directory"
        $ECHO "Aborting"
        exit 1
    fi
done
# clean directory results
rm -rf ./results/*
for DIR in "$TMP_DIR" "$EXAMPLE_DIR/results" ; do
    if test ! -d $DIR ; then
        mkdir $DIR
    fi
done
cd $EXAMPLE_DIR/results

# check for executables
for FILE in $BIN_LIST ; do
    if test ! -x $BIN_DIR/$FILE ; then
        $ECHO
        $ECHO "ERROR: $BIN_DIR/$FILE not existent or not executable"
        $ECHO "Aborting"
        exit 1
    fi
done

# check for pseudopotentials
for FILE in $PSEUDO_LIST ; do
    if test ! -r $PSEUDO_DIR/$FILE ; then
        $ECHO
        $ECHO "ERROR: $PSEUDO_DIR/$FILE not existent or not readable"
        $ECHO "Aborting"
        exit 1
    fi
done
$ECHO " done"

# how to run executables
PW_COMMAND="$PARA_PREFIX $BIN_DIR/pw.x $PARA_POSTFIX"
X_COMMAND="$PARA_PREFIX $BIN_DIR/xspectra.x $PARA_POSTFIX"


$ECHO
$ECHO "  running pw.x as: $PW_COMMAND"
$ECHO "  running xspectra.x as: $X_COMMAND"
$ECHO

$ECHO
$ECHO "WARNING : All these calculations are underconverged"
$ECHO "    (These are simple quick tests)  "
$ECHO
$ECHO
$ECHO


$ECHO "###########################################"
$ECHO "#                  NiO                    #"
$ECHO "#  Calculation of K-edge XAS  without     #"
$ECHO "#    a core-hole in the final state       #"
$ECHO "#                                         #"
$ECHO "#   The parameters of this run are not    #"
$ECHO "#     converged. To obtain converged      #"
$ECHO "#            parameters see :             #"
$ECHO "# C. Gougoussis, M.Calandra, A. Seitsonen,#" 
$ECHO "#  Ch. Brouder, A. Shukla, F. Mauri       #"
$ECHO "#     Phys. Rev. B 79, 045118 (2009)      #"
$ECHO "###########################################"

# clean TMP_DIR
$ECHO "  cleaning $TMP_DIR...\c"
rm -rf $TMP_DIR/*
$ECHO " done"
# extracting core wavefunction
$ECHO "  extracting core wavefunction from pseudo...\c"
../../../XSpectra/tools/upf2plotcore.sh $PSEUDO_DIR/Ni_PBE_TM_2pj.UPF > ./Ni.wfc
$ECHO " done"

$ECHO "#"
$ECHO "# self-consistent calculation for NiO."
$ECHO "# Hubbard U is enabled"
$ECHO "#"

cat > NiO.scf.in << EOF
 &control
    calculation='scf',
    pseudo_dir = '$PSEUDO_DIR/',
    outdir='$TMP_DIR/',
    prefix='NiO',
 /
 &system
    ibrav = 5 ,
    celldm(1) =9.67155,
    celldm(4)=0.8333333333,
    nat = 4 ,
    ntyp = 3 ,
    nspin=2,
    ecutwfc = 70.0,
    starting_magnetization(1)=1.0,
    starting_magnetization(2)=-1.0,
    tot_magnetization = 0.0
    nbnd=24,
    lda_plus_u=.true.,
    Hubbard_U(1)=7.6,
    Hubbard_U(2)=7.6,
 /
 &electrons
    mixing_beta = 0.3,
 /
ATOMIC_SPECIES
Ni 58.6934   Ni_PBE_TM_2pj.UPF
NiB  58.6934   Ni_PBE_TM_2pj.UPF
O  15.9994   O_PBE_TM.UPF
ATOMIC_POSITIONS crystal
Ni  0.0000000000  0.0000000000  0.0000000000
NiB  -.5000000000  1.5000000000  -.5000000000
O  0.7500000000  -.2500000000  -.2500000000
O  -.7500000000  0.2500000000  0.2500000000
K_POINTS automatic
1 1 1 0 0 0
EOF

$ECHO "  running pw.x for NiO ...\c"
$PW_COMMAND < NiO.scf.in > NiO.scf.out
check_failure $?
$ECHO " done"

$ECHO "#"
$ECHO "# xanes calculations"
$ECHO "# cutting occupied states " 
$ECHO "#"
$ECHO "# x-ray absorption spectrum calculation"
$ECHO "# dipolar part"
$ECHO "#"

cat > NiO.xspectra_dip.in << EOF
 &input_xspectra
    calculation='xanes_dipole',
    prefix='NiO',
    outdir='$TMP_DIR/',
    xniter=1000,
    xcheck_conv=50,
    xepsilon(1)=1.0,
    xepsilon(2)=0.0,
    xepsilon(3)=0.0,
    xiabs=1,
    x_save_file='NiO.xspectra_dip.sav',
    ef_r=1.01439527,
    xerror=0.001,
 /
 &plot
    xnepoint=300,
    xgamma=0.8,
    xemin=-10.0,
    xemax=20.0,
    terminator=.true.,
    cut_occ_states=.true.,
 /
 &pseudos
    filecore='Ni.wfc',
    r_paw(1)=1.5,
 /
 &cut_occ
    cut_desmooth=0.1,
 /
2 2 2 0 0 0
EOF
$ECHO "  running xspectra.x ...\c"
$X_COMMAND < NiO.xspectra_dip.in > NiO.xspectra_dip.out
check_failure $?
mv xanes.dat NiO.xspectra_dip.dat
$ECHO " done"

$ECHO "#"
$ECHO "# now we calculate again the cross"
$ECHO "# section from the .sav file"
$ECHO "# with a different broadening"
$ECHO "# without need of performing a new lanczos"
$ECHO "#"

cat > NiO.xspectra_dip_replot.in << EOF
 &input_xspectra
    calculation='xanes_dipole',
    prefix='NiO',
    outdir='$TMP_DIR/',
    xonly_plot=.true.,
    xniter=1000,
    xcheck_conv=50,
    xepsilon(1)=1.0,
    xepsilon(2)=0.0,
    xepsilon(3)=0.0,
    xiabs=1,
    x_save_file='NiO.xspectra_dip.sav',
    ef_r=1.01439527,
    xerror=0.001,
 /
 &plot
    xnepoint=300,
    xgamma=1.5,
    xemin=-10.0,
    xemax=20.0,
    terminator=.true.,
    cut_occ_states=.true.,
 /
 &pseudos
    filecore='Ni.wfc',
    r_paw(1)=1.5,
 /
 &cut_occ
    cut_desmooth=0.1,
 /
2 2 2 0 0 0
EOF
$ECHO "  running xspectra.x ...\c"
$X_COMMAND < NiO.xspectra_dip_replot.in > NiO.xspectra_dip_replot.out
check_failure $?
mv xanes.dat NiO.xspectra_dip_replot.dat
$ECHO " done"

$ECHO "# "
$ECHO "#  quadrupolar part"
$ECHO "#"

cat > NiO.xspectra_qua.in << EOF
 &input_xspectra
    calculation='xanes_quadrupole',
    prefix='NiO',
    outdir='$TMP_DIR/',
    xniter=1000,
    xcheck_conv=50,
    xepsilon(1)=1.0,
    xepsilon(2)=-1.0,
    xepsilon(3)=0.0,
    xkvec(1)=1.0,
    xkvec(2)=1.0,
    xkvec(3)=-1.0,
    xiabs=1,
    x_save_file='NiO.xspectra_qua.sav',
    ef_r=1.01439527,
    xerror=0.001,
 /
 &plot
    xnepoint=300,
    xgamma=0.8,
    xemin=-10.0,
    xemax=20.0,
    terminator=.true.,
    cut_occ_states=.true.,
 /
 &pseudos
    filecore='Ni.wfc',
    r_paw(2)=1.5,
 /
 &cut_occ
    cut_desmooth=0.1,
 /
2 2 2 0 0 0
EOF
$ECHO "  running xspectra.x ...\c"
$X_COMMAND < NiO.xspectra_qua.in > NiO.xspectra_qua.out
check_failure $?
mv xanes.dat NiO.xspectra_qua.dat # this is the cross section
$ECHO " done"
exit
# clean TMP_DIR
$ECHO "  cleaning $TMP_DIR...\c"
rm -rf $TMP_DIR/*
$ECHO " done"
