## GENERIC SECTION
autodock_parameter_version 4.2       # used by autodock to validate parameter set
outlev ADT                           # diagnostic output level

## LIGAND-SPECIFIC SECTION
ligand_types A C HD N OA S           # atoms types in ligand
fld 1dwd_rec.maps.fld # grid_data_file
map 1dwd_rec.A.map    # atom-specific affinity map
map 1dwd_rec.C.map    # atom-specific affinity map
map 1dwd_rec.HD.map   # atom-specific affinity map
map 1dwd_rec.N.map    # atom-specific affinity map
map 1dwd_rec.OA.map   # atom-specific affinity map
map 1dwd_rec.S.map    # atom-specific affinity map
elecmap 1dwd_rec.e.map # electrostatics map
desolvmap 1dwd_rec.d.map # desolvation map
move best.pdbqt                      # small molecule

## EVALUATE LIGAND ENERGY in RECEPTOR SECTION
epdb                                 # small molecule to be evaluated
