SPADES: SAINT-PETERSBURG GENOME ASSEMBLER
Copyright (c) 2015-2019 Saint Petersburg State University
Copyright (c) 2011-2014 Saint Petersburg Academic University

SPAdes is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License, Version 2,
dated June 1991, as published by the Free Software Foundation.

SPAdes is distributed in the hope that it will be useful, but
WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
General Public License for more details.

You should have received a copy of the GNU General Public License along
with this program; if not, write to the Free Software Foundation, Inc.,
51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA.

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SPAdes
Genome assembler for single-cell and isolates data sets
Version: see VERSION

Developed in Center for Algorithmic Biotechnology, Institute of Translational Biomedicine, St. Petersburg State University.
Developed in Algorithmic Biology Lab of St. Petersburg Academic University of the Russian Academy of Sciences.

Current SPAdes contributors:

    Dmitry Antipov,
    Elena Bushmanova,
    Vasisliy Ershov,
    Yuriy Gorshkov,
    Alexey Gurevich,
    Anton Korobeynikov,
    Olga Kunyavskaya,
    Dmitriy Meleshko,
    Sergey Nurk,
    Andrey Prjibelski,
    Alexander Shlemov,
    Ivan Tolstoganov,
    Alla Lapidus and
    Pavel Pevzner

Also contributed:

    Max Alekseyev,
    Anton Bankevich,
    Mikhail Dvorkin,
    Alexander Kulikov,
    Valery Lesin,
    Sergey Nikolenko,
    Son Pham,
    Alexey Pyshkin,
    Yana Safonova,
    Vladislav Saveliev,
    Alexander Sirotkin,
    Yakov Sirotkin,
    Artem Tarasov,
    Glenn Tesler,
    Irina Vasilinetc,
    Nikolay Vyahhi

Installation instructions and manual can be found on the website:
http://cab.spbu.ru/software/spades/

Address for communication: spades.support@cab.spbu.ru

References:

Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail
Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham,
Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi,
Glenn Tesler, Max A. Alekseyev, and Pavel A. Pevzner. SPAdes: A New Genome
Assembly Algorithm and Its Applications to Single-Cell Sequencing.  Journal of
Computational Biology 19(5) (2012), 455-477. doi:10.1089/cmb.2012.0021

Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, 
Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, 
Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, 
Scott Clingenpeel, Tanja Woyke, Glenn Tesler, Max Alekseyev, and Pavel Pevzner.
Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads. Lecture Notes 
in Computer Science 7821 (2013), pp. 158-170. doi:10.1007/978-3-642-37195-0_13

