---
name: Bug report
about: Create a report to help us improve

---

**Is the bug primarily related to salmon (bulk mode) or alevin (single-cell mode)?**

**Describe the bug**
A clear and concise description of what the bug is.

**To Reproduce**
Steps and data to reproduce the behavior:

Specifically, please provide at least the following information:

  * Which version of salmon was used?
  * How was salmon installed (compiled, downloaded executable, through bioconda)?
  * Which reference (e.g. transcriptome) was used?
  * Which read files were used?
  * Which which program options were used?


**Expected behavior**
A clear and concise description of what you expected to happen.

**Screenshots**
If applicable, add screenshots or terminal output to help explain your problem.

**Desktop (please complete the following information):**
 - OS: [e.g. Ubuntu Linux, OSX]
 - Version [ If you are on OSX, the output of `sw_vers`. If you are on linux the output of `uname -a` and `lsb_release -a`]

**Additional context**
Add any other context about the problem here.
