/**
>HEADER
    Copyright (c) 2013 Rob Patro robp@cs.cmu.edu

    This file is part of Sailfish.

    Sailfish is free software: you can redistribute it and/or modify
    it under the terms of the GNU General Public License as published by
    the Free Software Foundation, either version 3 of the License, or
    (at your option) any later version.

    Sailfish is distributed in the hope that it will be useful,
    but WITHOUT ANY WARRANTY; without even the implied warranty of
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
    GNU General Public License for more details.

    You should have received a copy of the GNU General Public License
    along with Sailfish.  If not, see <http://www.gnu.org/licenses/>.
<HEADER
**/


# ifndef COMMON_TYPES_HPP
# define COMMON_TYPES_HPP

#include <cstdint>
#include <array>

namespace Sailfish {
    /*
	struct Kmer {
		uint64_t kmer;
	};

	struct Index {
		uint64_t index;
	};
    */
    struct TranscriptFeatures{
        std::string name;
        size_t length;
        double gcContent;
        std::array<uint64_t, 16> diNucleotides;
    };
}


# endif // COMMON_TYPES_HPP
