ParsEval: Locus at Group7.16[120837, 124114]

# Locus at Group7.16[120837, 124114]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene10 | gene8

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	120837	124094	1	-	.	ID=mRNA10
    Group7.16	OGS	three_prime_UTR	120837	120883	1	-	.	Parent=mRNA10
    Group7.16	OGS	exon	120837	120973	1	-	.	Parent=mRNA10
    Group7.16	OGS	stop_codon	120884	120886	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	120884	120973	.	-	0	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	intron	120974	121085	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	121086	121433	.	-	0	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	121086	121433	1	-	.	Parent=mRNA10
    Group7.16	OGS	intron	121434	121527	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	121528	122287	.	-	1	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	121528	122287	1	-	.	Parent=mRNA10
    Group7.16	OGS	intron	122288	122345	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	122346	122827	.	-	0	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	122346	122827	1	-	.	Parent=mRNA10
    Group7.16	OGS	intron	122828	122909	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	122910	123156	.	-	1	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	122910	123156	1	-	.	Parent=mRNA10
    Group7.16	OGS	intron	123157	123222	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	123223	123393	.	-	1	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	123223	123393	1	-	.	Parent=mRNA10
    Group7.16	OGS	intron	123394	123946	.	-	.	Parent=mRNA10
    Group7.16	OGS	CDS	123947	123951	.	-	0	ID=CDS10;Parent=mRNA10
    Group7.16	OGS	exon	123947	124094	1	-	.	Parent=mRNA10
    Group7.16	OGS	start_codon	123949	123951	.	-	.	Parent=mRNA10
    Group7.16	OGS	five_prime_UTR	123952	124094	1	-	.	Parent=mRNA10
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	120866	124108	.	-	.	ID=mRNA9;Name=XM_006562488.1;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	three_prime_UTR	120866	120883	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	120866	120973	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	stop_codon	120884	120886	.	-	.	Parent=mRNA9
    Group7.16	NCBI	CDS	120884	120973	.	-	0	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	120974	121085	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	121086	121433	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	CDS	121086	121433	.	-	0	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	121434	121527	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	121528	122287	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	CDS	121528	122287	.	-	1	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	122288	122345	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	122346	122827	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	CDS	122346	122827	.	-	0	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	122828	122909	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	122910	123156	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	CDS	122910	123156	.	-	1	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	123157	123222	.	-	.	Parent=mRNA9
    Group7.16	NCBI	exon	123223	123393	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	CDS	123223	123393	.	-	1	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	intron	123394	123946	.	-	.	Parent=mRNA9
    Group7.16	NCBI	CDS	123947	123951	.	-	0	ID=CDS8;Parent=mRNA9;Name=XP_006562551.1;Dbxref=GeneID:725406,Genbank:XP_006562551.1,BEEBASE:GB46282;gbkey=CDS;gene=LOC725406;product=serine%2Fthreonine-protein kinase PRP4 homolog isoform X1;protein_id=XP_006562551.1
    Group7.16	NCBI	exon	123947	124108	.	-	.	Parent=mRNA9;Dbxref=GeneID:725406,Genbank:XM_006562488.1,BEEBASE:GB46282;gbkey=mRNA;gene=LOC725406;product=uncharacterized LOC725406%2C transcript variant X1;transcript_id=XM_006562488.1
    Group7.16	NCBI	start_codon	123949	123951	.	-	.	Parent=mRNA9
    Group7.16	NCBI	five_prime_UTR	123952	124108	.	-	.	Parent=mRNA9
    ###

### CDS structure comparison

reference CDS segments | 7
prediction CDS segments | 7
CDS segments structures match perfectly!

### Exon structure comparison

reference exons | 7
match prediction | 5
don't match prediction | 2
prediction exons | 7
match reference | 5
don't match reference | 2
Sensitivity | 0.714
Specificity | 0.714
F1 score | 0.714
Annotation edit distance | 0.286

### UTR structure comparison

reference UTR segments | 2
match prediction | 0
don't match prediction | 2
prediction UTR segments | 2
match reference | 0
don't match reference | 2
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 1.000 | 0.987 | 0.987
correlation coefficient | 1.000 | 0.876 | --
sensitivity | 1.000 | 0.847 | --
specificity | 1.000 | 0.920 | --
F1 Score | 1.000 | 0.882 | --
Annotation edit distance | 0.000 | 0.116 | --

## Unmatched prediction transcripts

- mRNA10