ParsEval: Locus at Group7.16[117229, 119778]

# Locus at Group7.16[117229, 119778]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene8 | gene7
gene9 |

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	119475	119769	1	-	.	ID=mRNA9
    Group7.16	OGS	stop_codon	119475	119477	.	-	.	Parent=mRNA9
    Group7.16	OGS	CDS	119475	119675	.	-	0	ID=CDS9;Parent=mRNA9
    Group7.16	OGS	exon	119475	119675	.	-	.	Parent=mRNA9
    Group7.16	OGS	intron	119676	119754	.	-	.	Parent=mRNA9
    Group7.16	OGS	CDS	119755	119769	.	-	0	ID=CDS9;Parent=mRNA9
    Group7.16	OGS	exon	119755	119769	.	-	.	Parent=mRNA9
    Group7.16	OGS	start_codon	119767	119769	.	-	.	Parent=mRNA9
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	118880	119778	.	-	.	ID=mRNA8;Name=XM_006562490.1;Dbxref=GeneID:102655672,Genbank:XM_006562490.1;gbkey=mRNA;gene=LOC102655672;product=serine%2Fthreonine-protein kinase PRP4 homolog;transcript_id=XM_006562490.1
    Group7.16	NCBI	three_prime_UTR	118880	119474	.	-	.	Parent=mRNA8
    Group7.16	NCBI	exon	118880	119778	.	-	.	Parent=mRNA8;Dbxref=GeneID:102655672,Genbank:XM_006562490.1;gbkey=mRNA;gene=LOC102655672;product=serine%2Fthreonine-protein kinase PRP4 homolog;transcript_id=XM_006562490.1
    Group7.16	NCBI	stop_codon	119475	119477	.	-	.	Parent=mRNA8
    Group7.16	NCBI	CDS	119475	119660	.	-	0	Parent=mRNA8;Name=XP_006562553.1;Dbxref=GeneID:102655672,Genbank:XP_006562553.1;gbkey=CDS;gene=LOC102655672;product=serine%2Fthreonine-protein kinase PRP4 homolog;protein_id=XP_006562553.1
    Group7.16	NCBI	start_codon	119658	119660	.	-	.	Parent=mRNA8
    Group7.16	NCBI	five_prime_UTR	119661	119778	.	-	.	Parent=mRNA8
    ###

### CDS structure comparison

reference CDS segments | 2
match prediction | 0
don't match prediction | 2
prediction CDS segments | 1
match reference | 0
don't match reference | 1
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### Exon structure comparison

reference exons | 2
match prediction | 0
don't match prediction | 2
prediction exons | 1
match reference | 0
don't match reference | 1
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### UTR structure comparison

reference UTR segments | 0
match prediction | 0
don't match prediction | 0
prediction UTR segments | 2
match reference | 0
don't match reference | 2
Sensitivity | --
Specificity | 0.000
F1 score | --
Annotation edit distance | --

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 0.988 | 0.720 | 0.720
correlation coefficient | 0.922 | -- | --
sensitivity | 0.861 | -- | --
specificity | 1.000 | 0.000 | --
F1 Score | 0.925 | -- | --
Annotation edit distance | 0.069 | -- | --

## Unmatched reference transcripts

- mRNA8