ParsEval: Locus at Group7.16[75713, 79494]

# Locus at Group7.16[75713, 79494]

⇐ Back to Group7.16 loci

## Gene annotations

Reference | Prediction
--- | ---
gene4 | gene3

## Comparison(s)

### Reference GFF3

    ##gff-version 3
    Group7.16	OGS	mRNA	75757	79210	1	-	.	ID=mRNA4
    Group7.16	OGS	three_prime_UTR	75757	75834	1	-	.	Parent=mRNA4
    Group7.16	OGS	exon	75757	76028	1	-	.	Parent=mRNA4
    Group7.16	OGS	stop_codon	75835	75837	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	75835	76028	.	-	2	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	intron	76029	76285	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	76286	76370	.	-	0	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	exon	76286	76370	1	-	.	Parent=mRNA4
    Group7.16	OGS	intron	76371	77075	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	77076	77278	.	-	2	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	exon	77076	77278	1	-	.	Parent=mRNA4
    Group7.16	OGS	intron	77279	77348	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	77349	77436	.	-	0	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	exon	77349	77436	1	-	.	Parent=mRNA4
    Group7.16	OGS	intron	77437	78118	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	78119	78631	.	-	0	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	exon	78119	78631	1	-	.	Parent=mRNA4
    Group7.16	OGS	intron	78632	78903	.	-	.	Parent=mRNA4
    Group7.16	OGS	CDS	78904	79047	.	-	0	ID=CDS4;Parent=mRNA4
    Group7.16	OGS	exon	78904	79210	1	-	.	Parent=mRNA4
    Group7.16	OGS	start_codon	79045	79047	.	-	.	Parent=mRNA4
    Group7.16	OGS	five_prime_UTR	79048	79210	1	-	.	Parent=mRNA4
    ###

### Prediction GFF3

    ##gff-version 3
    Group7.16	NCBI	mRNA	75713	79494	.	-	.	ID=mRNA4;Name=XM_623919.3;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	three_prime_UTR	75713	75834	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	75713	76028	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	stop_codon	75835	75837	.	-	.	Parent=mRNA4
    Group7.16	NCBI	CDS	75835	76028	.	-	2	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	intron	76029	76285	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	76286	76370	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	CDS	76286	76370	.	-	0	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	intron	76371	77075	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	77076	77278	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	CDS	77076	77278	.	-	2	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	intron	77279	77348	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	77349	77436	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	CDS	77349	77436	.	-	0	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	intron	77437	78118	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	78119	78631	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	CDS	78119	78631	.	-	0	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	intron	78632	78903	.	-	.	Parent=mRNA4
    Group7.16	NCBI	CDS	78904	79047	.	-	0	ID=CDS4;Parent=mRNA4;Name=XP_623922.2;Dbxref=GeneID:551524,Genbank:XP_623922.2,BEEBASE:GB46286;gbkey=CDS;gene=LOC551524;product=zinc carboxypeptidase A 1-like isoform X2;protein_id=XP_623922.2
    Group7.16	NCBI	exon	78904	79055	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	start_codon	79045	79047	.	-	.	Parent=mRNA4
    Group7.16	NCBI	five_prime_UTR	79048	79055	.	-	.	Parent=mRNA4
    Group7.16	NCBI	intron	79056	79460	.	-	.	Parent=mRNA4
    Group7.16	NCBI	exon	79461	79494	.	-	.	Parent=mRNA4;Dbxref=GeneID:551524,Genbank:XM_623919.3,BEEBASE:GB46286;gbkey=mRNA;gene=LOC551524;product=zinc carboxypeptidase A 1-like%2C transcript variant X2;transcript_id=XM_623919.3
    Group7.16	NCBI	five_prime_UTR	79461	79494	.	-	.	Parent=mRNA4
    ###

### CDS structure comparison

reference CDS segments | 6
prediction CDS segments | 6
CDS segments structures match perfectly!

### Exon structure comparison

reference exons | 6
match prediction | 4
don't match prediction | 2
prediction exons | 7
match reference | 4
don't match reference | 3
Sensitivity | 0.667
Specificity | 0.571
F1 score | 0.615
Annotation edit distance | 0.381

### UTR structure comparison

reference UTR segments | 2
match prediction | 0
don't match prediction | 2
prediction UTR segments | 3
match reference | 0
don't match reference | 3
Sensitivity | 0.000
Specificity | 0.000
F1 score | --
Annotation edit distance | 1.000

### Nucleotide-level comparison

| CDS | UTRs | Overall
matching coefficient | 1.000 | 0.938 | 0.872
correlation coefficient | 1.000 | 0.402 | --
sensitivity | 1.000 | 0.357 | --
specificity | 1.000 | 0.524 | --
F1 Score | 1.000 | 0.425 | --
Annotation edit distance | 0.000 | 0.559 | --

## Unmatched prediction transcripts

- mRNA3