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# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
# 2003, 2004  Free Software Foundation, Inc.
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# gives unlimited permission to copy and/or distribute it,
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# mclfamily.html mclfamily.ps
doc_DATA_dep = mcl.html mcl.ps mcl.txt \
 mclfaq.html mclfaq.ps mclfaq.txt \
 mclfamily.html mclfamily.ps \
 mcx.html mcx.ps \
 mcxconvert.html mcxconvert.ps \
 mcxarray.html mcxarray.ps \
 mcxdump.html mcxdump.ps \
 mcxsubs.html mcxsubs.ps \
 mcxmap.html mcxmap.ps \
 mcxassemble.html mcxassemble.ps \
 mclpipeline.html mclpipeline.ps \
 index.html mclindex.ps \
 clmimac.html clmimac.ps \
 clmclose.html clmclose.ps \
 clmresidue.html clmresidue.ps \
 clmdist.html clmdist.ps \
 clminfo.html clminfo.ps \
 clmmate.html clmmate.ps \
 clmmeet.html clmmeet.ps \
 clmformat.html clmformat.ps \
 mcxio.html mcxio.ps

doc_DATA = $(doc_DATA_dep) mclmcl.txt
MAINTAINERCLEANFILES = mcl.1 mclfamily.7 mclfaq.7 mclindex.7 mcx.1 mcxio.5\
 mcxassemble.1 mcxmap.1 mcxdump.1 \
 clmdist.1 clminfo.1 clmmate.1 clmmeet.1 mcxconvert.1\
 clmresidue.1 clmformat.1 clmclose.1 clmimac.1 mcxarray.1 mcxsubs.1 mclpipeline.1\
 $(doc_DATA_dep)

ALIENFILES = mcxdeblast.html mcxdeblast.ps mclblastline.html mclblastline.ps
EXTRA_DIST = mclmcl.txt mcx.zmm\
 stamp.day stamp.month stamp.stamp stamp.tag stamp.year\
 clmformat.azm clmdist.azm clmmate.azm clminfo.azm clmmeet.azm mcl.azm\
 mclfamily.azm mclfaq.azm mcx.azm mclpipeline.azm\
 mcxdump.azm mcxconvert.azm mcxio.azm clmresidue.azm clmclose.azm clmimac.azm mcxassemble.azm\
 mcxmap.azm mcxarray.azm mcxsubs.azm index.in.azm index.html distindex.html\
 $(ALIENFILES)\
 $(MAINTAINERCLEANFILES)

man_MANS = mcl.1 mclindex.7 mclfamily.7 mclfaq.7 mcx.1 mcxio.5 \
   clmresidue.1 clmclose.1 clmimac.1 clmmate.1 clmmeet.1 clmformat.1 clmdist.1 clminfo.1 \
   mcxconvert.1 mcxassemble.1 mcxmap.1 mcxsubs.1 mcxdump.1 mcxarray.1 \
   mclpipeline.1

SUFFIXES = .1 .5 .7 .azm .html .ps .txt
all: all-am

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$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
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$(top_srcdir)/configure: @MAINTAINER_MODE_TRUE@ $(am__configure_deps)
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	for i in $$l2; do \
	  case "$$i" in \
	    *.1*) list="$$list $$i" ;; \
	  esac; \
	done; \
	for i in $$list; do \
	  ext=`echo $$i | sed -e 's/^.*\\.//'`; \
	  case "$$ext" in \
	    1*) ;; \
	    *) ext='1' ;; \
	  esac; \
	  inst=`echo $$i | sed -e 's/\\.[0-9a-z]*$$//'`; \
	  inst=`echo $$inst | sed -e 's/^.*\///'`; \
	  inst=`echo $$inst | sed '$(transform)'`.$$ext; \
	  echo " rm -f '$(DESTDIR)$(man1dir)/$$inst'"; \
	  rm -f "$(DESTDIR)$(man1dir)/$$inst"; \
	done
install-man5: $(man5_MANS) $(man_MANS)
	@$(NORMAL_INSTALL)
	test -z "$(man5dir)" || $(mkdir_p) "$(DESTDIR)$(man5dir)"
	@list='$(man5_MANS) $(dist_man5_MANS) $(nodist_man5_MANS)'; \
	l2='$(man_MANS) $(dist_man_MANS) $(nodist_man_MANS)'; \
	for i in $$l2; do \
	  case "$$i" in \
	    *.5*) list="$$list $$i" ;; \
	  esac; \
	done; \
	for i in $$list; do \
	  if test -f $(srcdir)/$$i; then file=$(srcdir)/$$i; \
	  else file=$$i; fi; \
	  ext=`echo $$i | sed -e 's/^.*\\.//'`; \
	  case "$$ext" in \
	    5*) ;; \
	    *) ext='5' ;; \
	  esac; \
	  inst=`echo $$i | sed -e 's/\\.[0-9a-z]*$$//'`; \
	  inst=`echo $$inst | sed -e 's/^.*\///'`; \
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	  echo " $(INSTALL_DATA) '$$file' '$(DESTDIR)$(man5dir)/$$inst'"; \
	  $(INSTALL_DATA) "$$file" "$(DESTDIR)$(man5dir)/$$inst"; \
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	@$(NORMAL_UNINSTALL)
	@list='$(man5_MANS) $(dist_man5_MANS) $(nodist_man5_MANS)'; \
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	    *.5*) list="$$list $$i" ;; \
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	    5*) ;; \
	    *) ext='5' ;; \
	  esac; \
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	  inst=`echo $$inst | sed -e 's/^.*\///'`; \
	  inst=`echo $$inst | sed '$(transform)'`.$$ext; \
	  echo " rm -f '$(DESTDIR)$(man5dir)/$$inst'"; \
	  rm -f "$(DESTDIR)$(man5dir)/$$inst"; \
	done
install-man7: $(man7_MANS) $(man_MANS)
	@$(NORMAL_INSTALL)
	test -z "$(man7dir)" || $(mkdir_p) "$(DESTDIR)$(man7dir)"
	@list='$(man7_MANS) $(dist_man7_MANS) $(nodist_man7_MANS)'; \
	l2='$(man_MANS) $(dist_man_MANS) $(nodist_man_MANS)'; \
	for i in $$l2; do \
	  case "$$i" in \
	    *.7*) list="$$list $$i" ;; \
	  esac; \
	done; \
	for i in $$list; do \
	  if test -f $(srcdir)/$$i; then file=$(srcdir)/$$i; \
	  else file=$$i; fi; \
	  ext=`echo $$i | sed -e 's/^.*\\.//'`; \
	  case "$$ext" in \
	    7*) ;; \
	    *) ext='7' ;; \
	  esac; \
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	  inst=`echo $$inst | sed -e 's/^.*\///'`; \
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	  $(INSTALL_DATA) "$$file" "$(DESTDIR)$(man7dir)/$$inst"; \
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uninstall-man7:
	@$(NORMAL_UNINSTALL)
	@list='$(man7_MANS) $(dist_man7_MANS) $(nodist_man7_MANS)'; \
	l2='$(man_MANS) $(dist_man_MANS) $(nodist_man_MANS)'; \
	for i in $$l2; do \
	  case "$$i" in \
	    *.7*) list="$$list $$i" ;; \
	  esac; \
	done; \
	for i in $$list; do \
	  ext=`echo $$i | sed -e 's/^.*\\.//'`; \
	  case "$$ext" in \
	    7*) ;; \
	    *) ext='7' ;; \
	  esac; \
	  inst=`echo $$i | sed -e 's/\\.[0-9a-z]*$$//'`; \
	  inst=`echo $$inst | sed -e 's/^.*\///'`; \
	  inst=`echo $$inst | sed '$(transform)'`.$$ext; \
	  echo " rm -f '$(DESTDIR)$(man7dir)/$$inst'"; \
	  rm -f "$(DESTDIR)$(man7dir)/$$inst"; \
	done
install-docDATA: $(doc_DATA)
	@$(NORMAL_INSTALL)
	test -z "$(docdir)" || $(mkdir_p) "$(DESTDIR)$(docdir)"
	@list='$(doc_DATA)'; for p in $$list; do \
	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " $(docDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(docdir)/$$f'"; \
	  $(docDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(docdir)/$$f"; \
	done

uninstall-docDATA:
	@$(NORMAL_UNINSTALL)
	@list='$(doc_DATA)'; for p in $$list; do \
	  f="`echo $$p | sed -e 's|^.*/||'`"; \
	  echo " rm -f '$(DESTDIR)$(docdir)/$$f'"; \
	  rm -f "$(DESTDIR)$(docdir)/$$f"; \
	done
tags: TAGS
TAGS:

ctags: CTAGS
CTAGS:


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	    $(srcdir)/*) file=`echo "$$file" | sed "s|^$$srcdirstrip/||"`;; \
	    $(top_srcdir)/*) file=`echo "$$file" | sed "s|^$$topsrcdirstrip/|$(top_builddir)/|"`;; \
	  esac; \
	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
	  dir=`echo "$$file" | sed -e 's,/[^/]*$$,,'`; \
	  if test "$$dir" != "$$file" && test "$$dir" != "."; then \
	    dir="/$$dir"; \
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	    dir=''; \
	  fi; \
	  if test -d $$d/$$file; then \
	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
	    fi; \
	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
	  else \
	    test -f $(distdir)/$$file \
	    || cp -p $$d/$$file $(distdir)/$$file \
	    || exit 1; \
	  fi; \
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check-am: all-am
check: check-am
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installcheck: installcheck-am
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	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
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clean-generic:

distclean-generic:
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.azm.1:
	$(ZOEM) -d roff -i $< -o $@
	$(ZOEM) -d roff -i $< -o $@

.azm.5:
	$(ZOEM) -d roff -i $< -o $@
	$(ZOEM) -d roff -i $< -o $@

.azm.7:
	$(ZOEM) -d roff -i $< -o $@
	$(ZOEM) -d roff -i $< -o $@

.1.ps:
	$(TROFF) -man $< > $@

.5.ps:
	$(TROFF) -man $< > $@

.7.ps:
	$(TROFF) -man $< > $@

.1.txt:
	$(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@

.5.txt:
	$(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@

.7.txt:
	$(TROFF) -t -e -mandoc -Tascii $< | $(COL) -bx > $@

.azm.html:
	$(ZOEM) -d html -i $< -o $@
	$(ZOEM) -d html -i $< -o $@
	- $(TIDY) -e $@

mclindex.7: index.in.azm
	$(ZOEM) -i index.in -d roff -o mclindex.7 -s install=1
	$(TROFF) -man mclindex.7 > mclindex.ps

index.html: index.in.azm
	$(ZOEM) -i index.in -o index.html -d html -s install=1
	$(ZOEM) -i index.in -o distindex.html -d html -s dist=1

mcl: mcl.txt            mcl.1            mcl.html            mcl.ps

clminfo:            clminfo.1        clminfo.html        clminfo.ps
clmmeet:            clmmeet.1        clmmeet.html        clmmeet.ps
clmformat:        clmformat.1      clmformat.html      clmformat.ps
clmdist:            clmdist.1        clmdist.html        clmdist.ps
clmmate:            clmmate.1        clmmate.html        clmmate.ps
clmresidue:      clmresidue.1     clmresidue.html     clmresidue.ps
clmimac:            clmimac.1        clmimac.html        clmimac.ps
clmclose:          clmclose.1       clmclose.html       clmclose.ps

mcx:                    mcx.1            mcx.html            mcx.ps
mcxassemble:    mcxassemble.1    mcxassemble.html    mcxassemble.ps
mcxmap:              mcxmap.1         mcxmap.html         mcxmap.ps
mcxsubs:            mcxsubs.1        mcxsubs.html        mcxsubs.ps
mcxarray:          mcxarray.1       mcxarray.html       mcxarray.ps
mcxdump:            mcxdump.1        mcxdump.html        mcxdump.ps
mcxconvert:      mcxconvert.1     mcxconvert.html     mcxconvert.ps

mclpipeline:    mclpipeline.1    mclpipeline.html    mclpipeline.ps

mcxio:                mcxio.5          mcxio.html          mcxio.ps

mclfaq:  mclfaq.txt  mclfaq.7         mclfaq.html         mclfaq.ps
mclfamily:        mclfamily.7      mclfamily.html      mclfamily.ps

index:             mclindex.7          index.html distindex.html

web: webindex.html
lit: litindex.html

webindex.html: webindex.azm
	$(ZOEM)  -i webindex.azm -o webindex.html -d html
	- $(TIDY) -e webindex.html

litindex.html: litindex.azm 3Party
	$(ZOEM)  -i litindex.azm -o litindex.html -d html
	- $(TIDY) -e litindex.html
# Tell versions [3.59,3.63) of GNU make to not export all variables.
# Otherwise a system limit (for SysV at least) may be exceeded.
.NOEXPORT:
